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Genome Browser - Interactively visualize genomic data. BLAT - Rapidly align sequences to the genome. In-Silico PCR - Rapidly align PCR primer pairs to the genome. Table Browser - Download and filter data from the Genome Browser.
Search the assembly: By position or search term: Use the "position or search term" box to find areas of the genome associated with many different attributes, such as a specific chromosomal coordinate range; mRNA, EST, or STS marker names; or keywords from the GenBank description of an mRNA. More information, including sample queries.
The UCSC genome browser and associated tools. UCSC genome browser tutorial. Step-by-step tutorial presented at ASHG 2009 annual meeting - basic browser navigation and functionality in the context of interpreting clinical genetics reports.
Genome Browser - Interactively visualize genomic data. BLAT - Rapidly align sequences to the genome. In-Silico PCR - Rapidly align PCR primer pairs to the genome. Table Browser - Download and filter data from the Genome Browser.
Human Genome Browser - hg19 assembly. View sequences. Homo sapiens. (Graphic courtesy of CBSE) The February 2009 human reference sequence (GRCh37) was produced by the Genome Reference Consortium. For more information about this assembly, see GRCh37 in the NCBI Assembly database.
Search through thousands of genome browsers Unable to find a genome? Send us a request. UCSC species tree and connected assembly hubs. Find Position. Assembly. Position/Search Term. Current position: GO. Genome Browser - assembly.
In-Silico PCR V39x1 searches a sequence database with a pair of PCR primers, using the BLAT index for fast performance. See an example video on our YouTube channel. This tool is not guaranteed to find absolutely all off-target locations, it is optimized for targets with higher identities.
Human Aligned mRNA Search Results. AY071919 - Homo sapiens zinc finger protein CTCF-T mRNA, complete cds. U25435 - Human transcriptional repressor (CTCF) mRNA, complete cds. BC130486 - Homo sapiens CCCTC-binding factor (zinc finger protein)-like, mRNA (cDNA clone MGC:163358 IMAGE:40146517), complete cds.
The UCSC Genome Browser is getting ready to update hg19's UCSC Genes dataset for the first time since 2013. In this update, the UCSC Genes track will now use GENCODE v45 gene models lifted to hg19 and replace the old UCSC transcript IDs with the official GENCODE IDs.
BLAT Search Genome. Paste in a query sequence to find its location in the the genome. Multiple sequences may be searched if separated by lines starting with '>' followed by the sequence name. File Upload: Rather than pasting a sequence, you can choose to upload a text file containing the sequence.