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Map of the human X chromosome (from the National Center for Biotechnology Information (NCBI) website) Bioinformatics ( / ˌbaɪ.oʊˌɪnfərˈmætɪks / ⓘ) is an interdisciplinary field of science that develops methods and software tools for understanding biological data, especially when the data sets are large and complex.
PolymiRTS: a database of DNA variations in putative microRNA target sites. PolyQ: database of polyglutamine repeats in disease and non-disease associated proteins. Rfam: a database of RNA families. IRESbase: A comprehensive database of experimentally validated internal ribosome entry sites.
Open Bioinformatics Foundation. BioPHP. PHP language toolkit with classes for DNA and protein sequence analysis, alignment, database parsing, and other bioinformatics tools. Cross-platform. GPL v2. Open Bioinformatics Foundation. Biopython. Python language toolkit. Cross-platform.
Biological data visualization is a branch of bioinformatics concerned with the application of computer graphics, scientific visualization, and information visualization to different areas of the life sciences. This includes visualization of sequences, genomes, alignments, phylogenies, macromolecular structures, systems biology, microscopy, and ...
A web interface is available to access the data and to give a fast overview of the proteins and their interactions. A plug-in for cytoscape to use STRING data is available. Another possibility to access data STRING is to use the application programming interface (API) by constructing a URL that contain the request. Data sources
Virtual Cell is an advanced software platform for modeling and simulating reaction kinetics, membrane transport and diffusion in the complex geometries of cells and multicellular tissues. VCell models have a hierarchical tree structure. The trunk level is the " Physiology " consisting of compartments, species and chemical reactions, and ...
List of biology websites. This is an annotated list of biological websites, including only notable websites dealing with biology generally and those with a more specific focus. Ask A Biologist - has been hosted by ASU School of Life Sciences since 1997. The website contains a large collection of free content, including images, stories, games ...
BLAST (biotechnology) In bioinformatics, BLAST ( basic local alignment search tool) [3] is an algorithm and program for comparing primary biological sequence information, such as the amino-acid sequences of proteins or the nucleotides of DNA and/or RNA sequences.